niftynet package¶
Subpackages¶
- niftynet.application package
- Submodules
- niftynet.application.autoencoder_application module
- niftynet.application.base_application module
- niftynet.application.classification_application module
- niftynet.application.gan_application module
- niftynet.application.label_driven_registration module
- niftynet.application.regression_application module
- niftynet.application.segmentation_application module
- Module contents
- Submodules
- niftynet.contrib package
- Subpackages
- niftynet.contrib.checkpoint_tools package
- niftynet.contrib.csv_reader package
- Subpackages
- niftynet.contrib.csv_reader.applications_maybe package
- Submodules
- niftynet.contrib.csv_reader.applications_maybe.autoencoder_application module
- niftynet.contrib.csv_reader.applications_maybe.gan_application module
- niftynet.contrib.csv_reader.applications_maybe.label_driven_registration module
- niftynet.contrib.csv_reader.applications_maybe.regression_application module
- niftynet.contrib.csv_reader.applications_maybe.segmentation_application module
- Module contents
- Submodules
- niftynet.contrib.csv_reader.applications_maybe package
- Submodules
- niftynet.contrib.csv_reader.class_seg_finnet module
- niftynet.contrib.csv_reader.classification_application module
- niftynet.contrib.csv_reader.csv_reader module
- niftynet.contrib.csv_reader.highres3dnet_features module
- niftynet.contrib.csv_reader.multitask_classifseg_application module
- niftynet.contrib.csv_reader.sampler_balanced_v2_csv module
- niftynet.contrib.csv_reader.sampler_csv_rows module
- niftynet.contrib.csv_reader.sampler_csvpatch module
- niftynet.contrib.csv_reader.sampler_grid_v2_csv module
- niftynet.contrib.csv_reader.sampler_linear_interpolate_v2_csv module
- niftynet.contrib.csv_reader.sampler_random_vector_v2_csv module
- niftynet.contrib.csv_reader.sampler_resize_v2_csv module
- niftynet.contrib.csv_reader.sampler_uniform_v2_csv module
- niftynet.contrib.csv_reader.sampler_weighted_v2_csv module
- niftynet.contrib.csv_reader.segmentation_application_patchsampler module
- niftynet.contrib.csv_reader.toynet_features module
- Module contents
- Subpackages
- niftynet.contrib.deep_boosted_regression package
- niftynet.contrib.evaluation package
- niftynet.contrib.layer package
- niftynet.contrib.learning_rate_schedule package
- niftynet.contrib.multi_output package
- niftynet.contrib.niftyreg_image_resampling package
- niftynet.contrib.preprocessors package
- niftynet.contrib.regression_weighted_sampler package
- niftynet.contrib.sampler_pairwise package
- niftynet.contrib.segmentation_bf_aug package
- niftynet.contrib.segmentation_selective_sampler package
- niftynet.contrib.ultrasound_simulator_gan package
- Module contents
- Subpackages
- niftynet.engine package
- Submodules
- niftynet.engine.application_driver module
- niftynet.engine.application_factory module
- niftynet.engine.application_initializer module
- niftynet.engine.application_iteration module
- niftynet.engine.application_optimiser module
- niftynet.engine.application_variables module
- niftynet.engine.handler_console module
- niftynet.engine.handler_early_stopping module
- niftynet.engine.handler_gradient module
- niftynet.engine.handler_model module
- niftynet.engine.handler_network_output module
- niftynet.engine.handler_performance module
- niftynet.engine.handler_sampler module
- niftynet.engine.handler_tensorboard module
- niftynet.engine.image_window module
- niftynet.engine.image_window_dataset module
- niftynet.engine.sampler_balanced_v2 module
- niftynet.engine.sampler_grid_v2 module
- niftynet.engine.sampler_linear_interpolate_v2 module
- niftynet.engine.sampler_random_vector_v2 module
- niftynet.engine.sampler_resize_v2 module
- niftynet.engine.sampler_uniform_v2 module
- niftynet.engine.sampler_weighted_v2 module
- niftynet.engine.signal module
- niftynet.engine.windows_aggregator_base module
- niftynet.engine.windows_aggregator_grid module
- niftynet.engine.windows_aggregator_identity module
- niftynet.engine.windows_aggregator_resize module
- Module contents
- Submodules
- niftynet.evaluation package
- Submodules
- niftynet.evaluation.base_evaluations module
- niftynet.evaluation.base_evaluator module
- niftynet.evaluation.classification_evaluations module
- niftynet.evaluation.classification_evaluator module
- niftynet.evaluation.evaluation_application_driver module
- niftynet.evaluation.pairwise_measures module
- niftynet.evaluation.region_properties module
- niftynet.evaluation.regression_evaluations module
- niftynet.evaluation.regression_evaluator module
- niftynet.evaluation.segmentation_evaluations module
- niftynet.evaluation.segmentation_evaluator module
- Module contents
- Submodules
- niftynet.io package
- niftynet.layer package
- Submodules
- niftynet.layer.activation module
- niftynet.layer.additive_upsample module
- niftynet.layer.affine_augmentation module
- niftynet.layer.approximated_smoothing module
- niftynet.layer.base_layer module
- niftynet.layer.binary_masking module
- niftynet.layer.bn module
- niftynet.layer.channel_sparse_convolution module
- niftynet.layer.convolution module
- niftynet.layer.crf module
- niftynet.layer.crop module
- niftynet.layer.deconvolution module
- niftynet.layer.dilatedcontext module
- niftynet.layer.discrete_label_normalisation module
- niftynet.layer.downsample module
- niftynet.layer.downsample_res_block module
- niftynet.layer.elementwise module
- niftynet.layer.fully_connected module
- niftynet.layer.gan_blocks module
- niftynet.layer.gn module
- niftynet.layer.grid_warper module
- niftynet.layer.histogram_normalisation module
- niftynet.layer.layer_util module
- niftynet.layer.linear_resize module
- niftynet.layer.loss_autoencoder module
- niftynet.layer.loss_classification module
- niftynet.layer.loss_classification_multi module
- niftynet.layer.loss_gan module
- niftynet.layer.loss_regression module
- niftynet.layer.loss_segmentation module
- niftynet.layer.mean_variance_normalisation module
- niftynet.layer.pad module
- niftynet.layer.post_processing module
- niftynet.layer.rand_bias_field module
- niftynet.layer.rand_elastic_deform module
- niftynet.layer.rand_flip module
- niftynet.layer.rand_rotation module
- niftynet.layer.rand_spatial_scaling module
- niftynet.layer.resampler module
- niftynet.layer.residual_unit module
- niftynet.layer.rgb_histogram_equilisation module
- niftynet.layer.spatial_gradient module
- niftynet.layer.spatial_transformer module
- niftynet.layer.squeeze_excitation module
- niftynet.layer.subpixel module
- niftynet.layer.upsample module
- niftynet.layer.upsample_res_block module
- Module contents
- Submodules
- niftynet.network package
- Submodules
- niftynet.network.base_net module
- niftynet.network.deepmedic module
- niftynet.network.dense_vnet module
- niftynet.network.highres3dnet module
- niftynet.network.highres3dnet_large module
- niftynet.network.highres3dnet_small module
- niftynet.network.holistic_net module
- niftynet.network.interventional_affine_net module
- niftynet.network.interventional_dense_net module
- niftynet.network.interventional_hybrid_net module
- niftynet.network.no_new_net module
- niftynet.network.resnet module
- niftynet.network.scalenet module
- niftynet.network.se_resnet module
- niftynet.network.simple_gan module
- niftynet.network.simulator_gan module
- niftynet.network.toynet module
- niftynet.network.unet module
- niftynet.network.unet_2d module
- niftynet.network.vae module
- niftynet.network.vnet module
- Module contents
- Submodules
- niftynet.utilities package
- Submodules
- niftynet.utilities.decorators module
- niftynet.utilities.download module
- niftynet.utilities.filename_matching module
- niftynet.utilities.histogram_standardisation module
- niftynet.utilities.niftynet_global_config module
- niftynet.utilities.niftynet_launch_config module
- niftynet.utilities.restore_initializer module
- niftynet.utilities.user_parameters_custom module
- niftynet.utilities.user_parameters_default module
- niftynet.utilities.user_parameters_helper module
- niftynet.utilities.user_parameters_parser module
- niftynet.utilities.user_parameters_regex module
- niftynet.utilities.util_common module
- niftynet.utilities.util_csv module
- niftynet.utilities.util_import module
- niftynet.utilities.versioneer_version module
- niftynet.utilities.versioning module
- Module contents
- Submodules