niftynet package

Subpackages

• niftynet.application package
  • Submodules
    • niftynet.application.autoencoder_application module
    • niftynet.application.base_application module
    • niftynet.application.classification_application module
    • niftynet.application.gan_application module
    • niftynet.application.label_driven_registration module
    • niftynet.application.regression_application module
    • niftynet.application.segmentation_application module
  • Module contents
• niftynet.contrib package
  • Subpackages
    • niftynet.contrib.checkpoint_tools package
      • Submodules
        • niftynet.contrib.checkpoint_tools.rename_checkpoint_to_partial module
      • Module contents
    • niftynet.contrib.csv_reader package
      • Subpackages
        • niftynet.contrib.csv_reader.applications_maybe package
          • Submodules
            • niftynet.contrib.csv_reader.applications_maybe.autoencoder_application module
            • niftynet.contrib.csv_reader.applications_maybe.gan_application module
            • niftynet.contrib.csv_reader.applications_maybe.label_driven_registration module
            • niftynet.contrib.csv_reader.applications_maybe.regression_application module
            • niftynet.contrib.csv_reader.applications_maybe.segmentation_application module
          • Module contents
      • Submodules
        • niftynet.contrib.csv_reader.class_seg_finnet module
        • niftynet.contrib.csv_reader.classification_application module
        • niftynet.contrib.csv_reader.csv_reader module
        • niftynet.contrib.csv_reader.highres3dnet_features module
        • niftynet.contrib.csv_reader.multitask_classifseg_application module
        • niftynet.contrib.csv_reader.sampler_balanced_v2_csv module
        • niftynet.contrib.csv_reader.sampler_csv_rows module
        • niftynet.contrib.csv_reader.sampler_csvpatch module
        • niftynet.contrib.csv_reader.sampler_grid_v2_csv module
        • niftynet.contrib.csv_reader.sampler_linear_interpolate_v2_csv module
        • niftynet.contrib.csv_reader.sampler_random_vector_v2_csv module
        • niftynet.contrib.csv_reader.sampler_resize_v2_csv module
        • niftynet.contrib.csv_reader.sampler_uniform_v2_csv module
        • niftynet.contrib.csv_reader.sampler_weighted_v2_csv module
        • niftynet.contrib.csv_reader.segmentation_application_patchsampler module
        • niftynet.contrib.csv_reader.toynet_features module
      • Module contents
    • niftynet.contrib.deep_boosted_regression package
      • Submodules
        • niftynet.contrib.deep_boosted_regression.regression_rec_application module
      • Module contents
    • niftynet.contrib.evaluation package
      • Submodules
        • niftynet.contrib.evaluation.classification_evaluations module
        • niftynet.contrib.evaluation.regression_evaluations module
        • niftynet.contrib.evaluation.segmentation_evaluations module
      • Module contents
    • niftynet.contrib.layer package
      • Submodules
        • niftynet.contrib.layer.resampler_optional_niftyreg module
      • Module contents
    • niftynet.contrib.learning_rate_schedule package
      • Submodules
        • niftynet.contrib.learning_rate_schedule.decay_lr_application module
      • Module contents
    • niftynet.contrib.multi_output package
      • Submodules
        • niftynet.contrib.multi_output.multi_output_test module
      • Module contents
    • niftynet.contrib.niftyreg_image_resampling package
      • Subpackages
        • niftynet.contrib.niftyreg_image_resampling.tests package
          • Submodules
            • niftynet.contrib.niftyreg_image_resampling.tests.test_python_wrapper module
            • niftynet.contrib.niftyreg_image_resampling.tests.test_resampler module
          • Module contents
      • Submodules
        • niftynet.contrib.niftyreg_image_resampling.niftyreg_image_resampling module
        • niftynet.contrib.niftyreg_image_resampling.setup module
      • Module contents
    • niftynet.contrib.preprocessors package
      • Submodules
        • niftynet.contrib.preprocessors.preprocessing module
      • Module contents
    • niftynet.contrib.regression_weighted_sampler package
      • Submodules
        • niftynet.contrib.regression_weighted_sampler.isample_regression module
      • Module contents
    • niftynet.contrib.sampler_pairwise package
      • Submodules
        • niftynet.contrib.sampler_pairwise.sampler_pairwise_resize module
        • niftynet.contrib.sampler_pairwise.sampler_pairwise_resize_csv module
        • niftynet.contrib.sampler_pairwise.sampler_pairwise_uniform module
        • niftynet.contrib.sampler_pairwise.sampler_pairwise_uniform_csv module
      • Module contents
    • niftynet.contrib.segmentation_bf_aug package
      • Submodules
        • niftynet.contrib.segmentation_bf_aug.segmentation_application_bfaug module
      • Module contents
    • niftynet.contrib.segmentation_selective_sampler package
      • Submodules
        • niftynet.contrib.segmentation_selective_sampler.sampler_selective module
        • niftynet.contrib.segmentation_selective_sampler.ss_app module
        • niftynet.contrib.segmentation_selective_sampler.test_sampler_selective module
      • Module contents
    • niftynet.contrib.ultrasound_simulator_gan package
      • Submodules
        • niftynet.contrib.ultrasound_simulator_gan.ultrasound_simulator_gan module
      • Module contents
  • Module contents
• niftynet.engine package
  • Submodules
    • niftynet.engine.application_driver module
    • niftynet.engine.application_factory module
    • niftynet.engine.application_initializer module
    • niftynet.engine.application_iteration module
    • niftynet.engine.application_optimiser module
    • niftynet.engine.application_variables module
    • niftynet.engine.handler_console module
    • niftynet.engine.handler_early_stopping module
    • niftynet.engine.handler_gradient module
    • niftynet.engine.handler_model module
    • niftynet.engine.handler_network_output module
    • niftynet.engine.handler_performance module
    • niftynet.engine.handler_sampler module
    • niftynet.engine.handler_tensorboard module
    • niftynet.engine.image_window module
    • niftynet.engine.image_window_dataset module
    • niftynet.engine.sampler_balanced_v2 module
    • niftynet.engine.sampler_grid_v2 module
    • niftynet.engine.sampler_linear_interpolate_v2 module
    • niftynet.engine.sampler_random_vector_v2 module
    • niftynet.engine.sampler_resize_v2 module
    • niftynet.engine.sampler_uniform_v2 module
    • niftynet.engine.sampler_weighted_v2 module
    • niftynet.engine.signal module
    • niftynet.engine.windows_aggregator_base module
    • niftynet.engine.windows_aggregator_grid module
    • niftynet.engine.windows_aggregator_identity module
    • niftynet.engine.windows_aggregator_resize module
  • Module contents
• niftynet.evaluation package
  • Submodules
    • niftynet.evaluation.base_evaluations module
    • niftynet.evaluation.base_evaluator module
    • niftynet.evaluation.classification_evaluations module
    • niftynet.evaluation.classification_evaluator module
    • niftynet.evaluation.evaluation_application_driver module
    • niftynet.evaluation.pairwise_measures module
    • niftynet.evaluation.region_properties module
    • niftynet.evaluation.regression_evaluations module
    • niftynet.evaluation.regression_evaluator module
    • niftynet.evaluation.segmentation_evaluations module
    • niftynet.evaluation.segmentation_evaluator module
  • Module contents
• niftynet.io package
  • Submodules
    • niftynet.io.image_loader module
    • niftynet.io.image_reader module
    • niftynet.io.image_sets_partitioner module
    • niftynet.io.image_type module
    • niftynet.io.misc_io module
  • Module contents
• niftynet.layer package
  • Submodules
    • niftynet.layer.activation module
    • niftynet.layer.additive_upsample module
    • niftynet.layer.affine_augmentation module
    • niftynet.layer.approximated_smoothing module
    • niftynet.layer.base_layer module
    • niftynet.layer.binary_masking module
    • niftynet.layer.bn module
    • niftynet.layer.channel_sparse_convolution module
    • niftynet.layer.convolution module
    • niftynet.layer.crf module
    • niftynet.layer.crop module
    • niftynet.layer.deconvolution module
    • niftynet.layer.dilatedcontext module
    • niftynet.layer.discrete_label_normalisation module
    • niftynet.layer.downsample module
    • niftynet.layer.downsample_res_block module
    • niftynet.layer.elementwise module
    • niftynet.layer.fully_connected module
    • niftynet.layer.gan_blocks module
    • niftynet.layer.gn module
    • niftynet.layer.grid_warper module
    • niftynet.layer.histogram_normalisation module
    • niftynet.layer.layer_util module
    • niftynet.layer.linear_resize module
    • niftynet.layer.loss_autoencoder module
    • niftynet.layer.loss_classification module
    • niftynet.layer.loss_classification_multi module
    • niftynet.layer.loss_gan module
    • niftynet.layer.loss_regression module
    • niftynet.layer.loss_segmentation module
    • niftynet.layer.mean_variance_normalisation module
    • niftynet.layer.pad module
    • niftynet.layer.post_processing module
    • niftynet.layer.rand_bias_field module
    • niftynet.layer.rand_elastic_deform module
    • niftynet.layer.rand_flip module
    • niftynet.layer.rand_rotation module
    • niftynet.layer.rand_spatial_scaling module
    • niftynet.layer.resampler module
    • niftynet.layer.residual_unit module
    • niftynet.layer.rgb_histogram_equilisation module
    • niftynet.layer.spatial_gradient module
    • niftynet.layer.spatial_transformer module
    • niftynet.layer.squeeze_excitation module
    • niftynet.layer.subpixel module
    • niftynet.layer.upsample module
    • niftynet.layer.upsample_res_block module
  • Module contents
• niftynet.network package
  • Submodules
    • niftynet.network.base_net module
    • niftynet.network.deepmedic module
    • niftynet.network.dense_vnet module
    • niftynet.network.highres3dnet module
    • niftynet.network.highres3dnet_large module
    • niftynet.network.highres3dnet_small module
    • niftynet.network.holistic_net module
    • niftynet.network.interventional_affine_net module
    • niftynet.network.interventional_dense_net module
    • niftynet.network.interventional_hybrid_net module
    • niftynet.network.no_new_net module
    • niftynet.network.resnet module
    • niftynet.network.scalenet module
    • niftynet.network.se_resnet module
    • niftynet.network.simple_gan module
    • niftynet.network.simulator_gan module
    • niftynet.network.toynet module
    • niftynet.network.unet module
    • niftynet.network.unet_2d module
    • niftynet.network.vae module
    • niftynet.network.vnet module
  • Module contents
• niftynet.utilities package
  • Submodules
    • niftynet.utilities.decorators module
    • niftynet.utilities.download module
    • niftynet.utilities.filename_matching module
    • niftynet.utilities.histogram_standardisation module
    • niftynet.utilities.niftynet_global_config module
    • niftynet.utilities.niftynet_launch_config module
    • niftynet.utilities.restore_initializer module
    • niftynet.utilities.user_parameters_custom module
    • niftynet.utilities.user_parameters_default module
    • niftynet.utilities.user_parameters_helper module
    • niftynet.utilities.user_parameters_parser module
    • niftynet.utilities.user_parameters_regex module
    • niftynet.utilities.util_common module
    • niftynet.utilities.util_csv module
    • niftynet.utilities.util_import module
    • niftynet.utilities.versioneer_version module
    • niftynet.utilities.versioning module
  • Module contents

Module contents

main()