Python Module Index

a | c | e | i | l | n | u | v
 
a
niftynet.application Specific high-level NiftyNet applications.
    niftynet.application.autoencoder_application
    niftynet.application.base_application
    niftynet.application.classification_application
    niftynet.application.gan_application
    niftynet.application.label_driven_registration
    niftynet.application.regression_application
    niftynet.application.segmentation_application
 
c
niftynet.contrib Experimental code for new features.
    niftynet.contrib.checkpoint_tools
    niftynet.contrib.checkpoint_tools.rename_checkpoint_to_partial
    niftynet.contrib.dataset_sampler
    niftynet.contrib.dataset_sampler.image_window_dataset
    niftynet.contrib.dataset_sampler.sampler_balanced_v2
    niftynet.contrib.dataset_sampler.sampler_grid_v2
    niftynet.contrib.dataset_sampler.sampler_linear_interpolate_v2
    niftynet.contrib.dataset_sampler.sampler_random_vector_v2
    niftynet.contrib.dataset_sampler.sampler_resize_v2
    niftynet.contrib.dataset_sampler.sampler_uniform_v2
    niftynet.contrib.dataset_sampler.sampler_weighted_v2
    niftynet.contrib.evaluation
    niftynet.contrib.evaluation.classification_evaluations
    niftynet.contrib.evaluation.regression_evaluations
    niftynet.contrib.evaluation.segmentation_evaluations
    niftynet.contrib.layer
    niftynet.contrib.learning_rate_schedule
    niftynet.contrib.learning_rate_schedule.decay_lr_application
    niftynet.contrib.regression_weighted_sampler
    niftynet.contrib.regression_weighted_sampler.isample_regression
    niftynet.contrib.sampler_pairwise
    niftynet.contrib.sampler_pairwise.sampler_pairwise_resize
    niftynet.contrib.sampler_pairwise.sampler_pairwise_uniform
    niftynet.contrib.segmentation_selective_sampler
    niftynet.contrib.segmentation_selective_sampler.sampler_selective
    niftynet.contrib.segmentation_selective_sampler.ss_app
    niftynet.contrib.segmentation_selective_sampler.test_sampler_selective
    niftynet.contrib.ultrasound_simulator_gan
    niftynet.contrib.ultrasound_simulator_gan.ultrasound_simulator_gan
 
e
niftynet.engine Application engine.
    niftynet.engine.application_driver
    niftynet.engine.application_factory
    niftynet.engine.application_initializer
    niftynet.engine.application_iteration
    niftynet.engine.application_optimiser
    niftynet.engine.application_variables
    niftynet.engine.handler_console
    niftynet.engine.handler_gradient
    niftynet.engine.handler_model
    niftynet.engine.handler_network_output
    niftynet.engine.handler_sampler
    niftynet.engine.handler_tensorboard
    niftynet.engine.image_window
    niftynet.engine.image_window_buffer
    niftynet.engine.sampler_balanced
    niftynet.engine.sampler_grid
    niftynet.engine.sampler_linear_interpolate
    niftynet.engine.sampler_random_vector
    niftynet.engine.sampler_resize
    niftynet.engine.sampler_uniform
    niftynet.engine.sampler_weighted
    niftynet.engine.signal
    niftynet.engine.windows_aggregator_base
    niftynet.engine.windows_aggregator_classifier
    niftynet.engine.windows_aggregator_grid
    niftynet.engine.windows_aggregator_identity
    niftynet.engine.windows_aggregator_resize
niftynet.evaluation Evaluation metrics for network outputs.
    niftynet.evaluation.base_evaluations
    niftynet.evaluation.base_evaluator
    niftynet.evaluation.classification_evaluations
    niftynet.evaluation.classification_evaluator
    niftynet.evaluation.evaluation_application_driver
    niftynet.evaluation.pairwise_measures
    niftynet.evaluation.region_properties
    niftynet.evaluation.regression_evaluations
    niftynet.evaluation.regression_evaluator
    niftynet.evaluation.segmentation_evaluations
    niftynet.evaluation.segmentation_evaluator
 
i
niftynet.io High-level input / output operations.
    niftynet.io.image_loader
    niftynet.io.image_reader
    niftynet.io.image_sets_partitioner
    niftynet.io.image_type
    niftynet.io.misc_io
 
l
niftynet.layer Building blocks for neural network layers.
    niftynet.layer.activation
    niftynet.layer.additive_upsample
    niftynet.layer.approximated_smoothing
    niftynet.layer.base_layer
    niftynet.layer.binary_masking
    niftynet.layer.bn
    niftynet.layer.channel_sparse_convolution
    niftynet.layer.convolution
    niftynet.layer.crf
    niftynet.layer.crop
    niftynet.layer.deconvolution
    niftynet.layer.dilatedcontext
    niftynet.layer.discrete_label_normalisation
    niftynet.layer.downsample
    niftynet.layer.downsample_res_block
    niftynet.layer.elementwise
    niftynet.layer.fully_connected
    niftynet.layer.gan_blocks
    niftynet.layer.grid_warper
    niftynet.layer.histogram_normalisation
    niftynet.layer.layer_util
    niftynet.layer.linear_resize
    niftynet.layer.loss_autoencoder
    niftynet.layer.loss_classification
    niftynet.layer.loss_gan
    niftynet.layer.loss_regression
    niftynet.layer.loss_segmentation
    niftynet.layer.mean_variance_normalisation
    niftynet.layer.pad
    niftynet.layer.post_processing
    niftynet.layer.rand_elastic_deform
    niftynet.layer.rand_flip
    niftynet.layer.rand_rotation
    niftynet.layer.rand_spatial_scaling
    niftynet.layer.resampler
    niftynet.layer.residual_unit
    niftynet.layer.spatial_gradient
    niftynet.layer.spatial_transformer
    niftynet.layer.upsample
    niftynet.layer.upsample_res_block
 
n
niftynet Entry points for the NiftyNet CLI.
niftynet.network Neural network (re-)implementations.
    niftynet.network.base_net
    niftynet.network.deepmedic
    niftynet.network.dense_vnet
    niftynet.network.highres3dnet
    niftynet.network.highres3dnet_large
    niftynet.network.highres3dnet_small
    niftynet.network.holistic_net
    niftynet.network.interventional_affine_net
    niftynet.network.interventional_dense_net
    niftynet.network.interventional_hybrid_net
    niftynet.network.resnet
    niftynet.network.scalenet
    niftynet.network.simple_gan
    niftynet.network.simulator_gan
    niftynet.network.toynet
    niftynet.network.unet
    niftynet.network.unet_2d
    niftynet.network.vae
    niftynet.network.vnet
 
u
niftynet.utilities High-level re-usable utilities.
    niftynet.utilities.decorators
    niftynet.utilities.download
    niftynet.utilities.filename_matching
    niftynet.utilities.histogram_standardisation
    niftynet.utilities.niftynet_global_config
    niftynet.utilities.restore_initializer
    niftynet.utilities.user_parameters_custom
    niftynet.utilities.user_parameters_default
    niftynet.utilities.user_parameters_helper
    niftynet.utilities.user_parameters_parser
    niftynet.utilities.user_parameters_regex
    niftynet.utilities.util_common
    niftynet.utilities.util_csv
    niftynet.utilities.util_import
    niftynet.utilities.versioneer_version
    niftynet.utilities.versioning
 
v
versioneer