All modules for which code is available
- blinker.base
- niftynet
- niftynet.application.autoencoder_application
- niftynet.application.base_application
- niftynet.application.classification_application
- niftynet.application.gan_application
- niftynet.application.label_driven_registration
- niftynet.application.regression_application
- niftynet.application.segmentation_application
- niftynet.contrib.checkpoint_tools.rename_checkpoint_to_partial
- niftynet.contrib.csv_reader.applications_maybe.autoencoder_application
- niftynet.contrib.csv_reader.applications_maybe.gan_application
- niftynet.contrib.csv_reader.applications_maybe.label_driven_registration
- niftynet.contrib.csv_reader.applications_maybe.regression_application
- niftynet.contrib.csv_reader.applications_maybe.segmentation_application
- niftynet.contrib.csv_reader.class_seg_finnet
- niftynet.contrib.csv_reader.classification_application
- niftynet.contrib.csv_reader.csv_reader
- niftynet.contrib.csv_reader.highres3dnet_features
- niftynet.contrib.csv_reader.multitask_classifseg_application
- niftynet.contrib.csv_reader.sampler_balanced_v2_csv
- niftynet.contrib.csv_reader.sampler_csv_rows
- niftynet.contrib.csv_reader.sampler_csvpatch
- niftynet.contrib.csv_reader.sampler_grid_v2_csv
- niftynet.contrib.csv_reader.sampler_linear_interpolate_v2_csv
- niftynet.contrib.csv_reader.sampler_random_vector_v2_csv
- niftynet.contrib.csv_reader.sampler_resize_v2_csv
- niftynet.contrib.csv_reader.sampler_uniform_v2_csv
- niftynet.contrib.csv_reader.sampler_weighted_v2_csv
- niftynet.contrib.csv_reader.segmentation_application_patchsampler
- niftynet.contrib.csv_reader.toynet_features
- niftynet.contrib.deep_boosted_regression.regression_rec_application
- niftynet.contrib.evaluation.classification_evaluations
- niftynet.contrib.evaluation.segmentation_evaluations
- niftynet.contrib.learning_rate_schedule.decay_lr_application
- niftynet.contrib.multi_output.multi_output_test
- niftynet.contrib.preprocessors.preprocessing
- niftynet.contrib.regression_weighted_sampler.isample_regression
- niftynet.contrib.sampler_pairwise.sampler_pairwise_resize
- niftynet.contrib.sampler_pairwise.sampler_pairwise_resize_csv
- niftynet.contrib.sampler_pairwise.sampler_pairwise_uniform
- niftynet.contrib.sampler_pairwise.sampler_pairwise_uniform_csv
- niftynet.contrib.segmentation_bf_aug.segmentation_application_bfaug
- niftynet.contrib.segmentation_selective_sampler.sampler_selective
- niftynet.contrib.segmentation_selective_sampler.ss_app
- niftynet.contrib.segmentation_selective_sampler.test_sampler_selective
- niftynet.contrib.ultrasound_simulator_gan.ultrasound_simulator_gan
- niftynet.engine.application_driver
- niftynet.engine.application_factory
- niftynet.engine.application_initializer
- niftynet.engine.application_iteration
- niftynet.engine.application_optimiser
- niftynet.engine.application_variables
- niftynet.engine.handler_console
- niftynet.engine.handler_early_stopping
- niftynet.engine.handler_gradient
- niftynet.engine.handler_model
- niftynet.engine.handler_network_output
- niftynet.engine.handler_performance
- niftynet.engine.handler_sampler
- niftynet.engine.handler_tensorboard
- niftynet.engine.image_window
- niftynet.engine.image_window_dataset
- niftynet.engine.sampler_balanced_v2
- niftynet.engine.sampler_grid_v2
- niftynet.engine.sampler_linear_interpolate_v2
- niftynet.engine.sampler_random_vector_v2
- niftynet.engine.sampler_resize_v2
- niftynet.engine.sampler_uniform_v2
- niftynet.engine.sampler_weighted_v2
- niftynet.engine.windows_aggregator_base
- niftynet.engine.windows_aggregator_grid
- niftynet.engine.windows_aggregator_identity
- niftynet.engine.windows_aggregator_resize
- niftynet.evaluation.base_evaluations
- niftynet.evaluation.base_evaluator
- niftynet.evaluation.classification_evaluations
- niftynet.evaluation.classification_evaluator
- niftynet.evaluation.evaluation_application_driver
- niftynet.evaluation.pairwise_measures
- niftynet.evaluation.region_properties
- niftynet.evaluation.regression_evaluations
- niftynet.evaluation.regression_evaluator
- niftynet.evaluation.segmentation_evaluations
- niftynet.evaluation.segmentation_evaluator
- niftynet.io.image_loader
- niftynet.io.image_reader
- niftynet.io.image_sets_partitioner
- niftynet.io.image_type
- niftynet.io.misc_io
- niftynet.layer.activation
- niftynet.layer.additive_upsample
- niftynet.layer.affine_augmentation
- niftynet.layer.approximated_smoothing
- niftynet.layer.base_layer
- niftynet.layer.binary_masking
- niftynet.layer.bn
- niftynet.layer.channel_sparse_convolution
- niftynet.layer.convolution
- niftynet.layer.crf
- niftynet.layer.crop
- niftynet.layer.deconvolution
- niftynet.layer.dilatedcontext
- niftynet.layer.discrete_label_normalisation
- niftynet.layer.downsample
- niftynet.layer.downsample_res_block
- niftynet.layer.elementwise
- niftynet.layer.fully_connected
- niftynet.layer.gan_blocks
- niftynet.layer.gn
- niftynet.layer.grid_warper
- niftynet.layer.histogram_normalisation
- niftynet.layer.layer_util
- niftynet.layer.linear_resize
- niftynet.layer.loss_autoencoder
- niftynet.layer.loss_classification
- niftynet.layer.loss_classification_multi
- niftynet.layer.loss_gan
- niftynet.layer.loss_regression
- niftynet.layer.loss_segmentation
- niftynet.layer.mean_variance_normalisation
- niftynet.layer.pad
- niftynet.layer.post_processing
- niftynet.layer.rand_bias_field
- niftynet.layer.rand_elastic_deform
- niftynet.layer.rand_flip
- niftynet.layer.rand_rotation
- niftynet.layer.rand_spatial_scaling
- niftynet.layer.resampler
- niftynet.layer.residual_unit
- niftynet.layer.rgb_histogram_equilisation
- niftynet.layer.spatial_gradient
- niftynet.layer.spatial_transformer
- niftynet.layer.squeeze_excitation
- niftynet.layer.subpixel
- niftynet.layer.upsample
- niftynet.layer.upsample_res_block
- niftynet.network.base_net
- niftynet.network.deepmedic
- niftynet.network.dense_vnet
- niftynet.network.highres3dnet
- niftynet.network.highres3dnet_large
- niftynet.network.highres3dnet_small
- niftynet.network.holistic_net
- niftynet.network.interventional_affine_net
- niftynet.network.interventional_dense_net
- niftynet.network.interventional_hybrid_net
- niftynet.network.no_new_net
- niftynet.network.resnet
- niftynet.network.scalenet
- niftynet.network.se_resnet
- niftynet.network.simple_gan
- niftynet.network.simulator_gan
- niftynet.network.toynet
- niftynet.network.unet
- niftynet.network.unet_2d
- niftynet.network.vae
- niftynet.network.vnet
- niftynet.utilities.decorators
- niftynet.utilities.download
- niftynet.utilities.filename_matching
- niftynet.utilities.histogram_standardisation
- niftynet.utilities.niftynet_global_config
- niftynet.utilities.niftynet_launch_config
- niftynet.utilities.restore_initializer
- niftynet.utilities.user_parameters_custom
- niftynet.utilities.user_parameters_default
- niftynet.utilities.user_parameters_helper
- niftynet.utilities.user_parameters_parser
- niftynet.utilities.user_parameters_regex
- niftynet.utilities.util_common
- niftynet.utilities.util_csv
- niftynet.utilities.util_import
- niftynet.utilities.versioneer_version
- niftynet.utilities.versioning
- versioneer